Biography

Ira Fleming is a research technician in the Shalek lab working on producing and analyzing RNA-sequencing data as a lens for the study of infectious disease. He received his B.A. in Molecular Biology from Pomona College in 2018 and moved Eastward, away from SoCal and his home in Seattle. Ira also loves to run, hike, and play music that he composes based on gene sequences on his cello.

Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation
  • Kummerlowe et al.,
  • Science Translational Medicine,
  • 2022
  • Cell Atlas
  • Infectious Disease
  • Biology
  • Genomics
  • Microbiology
  • Immunology
  • Conner Kummerlowe
  • Travis Hughes
  • Nolawit Mulugeta
  • Ira Fleming
  • Marko Vukovic
  • Benjamin Doran
  • Toby Aicher
  • Marc Wadsworth II
  • José Ordovas-Montañes
  • Alex K. Shalek
Clinical implementation of single-cell RNA sequencing using liver fine needle aspirate tissue sampling and centralized processing captures compartment specific immuno-diversity
  • Genshaft et al.,
  • bioRxiv,
  • 2021
  • Immunology
  • R&D
  • Infectious Disease
  • Technology
  • Computational Methods
  • Cell Atlas
  • Biology
  • Genomics
  • Alex Genshaft
  • Mike Vilme
  • Riley Drake
  • Ira Fleming
  • Nancy Tran
  • Constantine Tzouanas
  • Jasmin Joseph-Chazan
  • Alex K. Shalek
Single-cell immunophenotyping of the skin lesion erythema migrans identifies IgM memory B cells
  • Jiang et al.,
  • JCI Insight,
  • 2021
  • Immunology
  • Infectious Disease
  • Genomics
  • Biology
  • Ira Fleming
  • Alex K. Shalek
Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation in severe disease
  • Kummerlowe et al.,
  • bioRxiv,
  • 2021
  • Biology
  • Genomics
  • Immunology
  • Infectious Disease
  • Conner Kummerlowe
  • Travis Hughes
  • Nolawit Mulugeta
  • Ira Fleming
  • Marko Vukovic
  • Benjamin Doran
  • José Ordovas-Montañes
  • Alex K. Shalek
Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu
  • Goods et al.,
  • JCI Insight,
  • 2021
  • Genomics
  • Medicine
  • Immunology
  • Biology
  • Brittany Goods
  • Riley Drake
  • Ira Fleming
  • Alex K. Shalek
Functional compensation precedes recovery of tissue mass following acute liver injury
  • Walesky et al.,
  • Nature Communications,
  • 2020
  • Genomics
  • Immunology
  • Biology
  • Kellie Kolb
  • Ira Fleming
  • Alex K. Shalek
Inflammasomes within hyperactive murine dendritic cells stimulate long-lived T cell-mediated anti-tumor immunity
  • Zhivaki et al.,
  • Cell Reports,
  • 2020
  • Immunology
  • Genomics
  • Medicine
  • Biology
  • Cancer
  • Benjamin Doran
  • Ira Fleming
  • Alex K. Shalek
Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu
  • Goods et al.,
  • biorXiv,
  • 2020
  • Genomics
  • Biology
  • Medicine
  • Immunology
  • Brittany Goods
  • Riley Drake
  • Ira Fleming
  • Alex K. Shalek