The Single Cell Notebooks for inclusive and accessible training in single-cell and spatial omics

Computational Methods Computational Methods
Genomics Genomics
Technology Technology
Alex K. Shalek Alex K. Shalek
Daniela Russo Daniela Russo
Sergio Triana Sergio Triana

Rojas-Hidalgo et al.▾ Rojas-Hidalgo, A., Arias-Carrasco, R., Silva, J. K., Armingol, E., Urquiza-Zurich, S., Vinagre, B., Prada-Medina, C. A., Triana, S., Russo, D. D., Pérez-Stuardo, D., Vicencio, E., Muñoz, G., Antunes de Lanna, C., Santos, L., Rapozo, G., Tavares, N., Moreno-Estrada, A., Randell, J., Severino, P., Khouri, R., Ashenberg, O., Shalek, A. K., Boroni, M., Cuesta-Astroz, Y., Carvalho, B. S., Maracaja-Coutinho, V.

Nature Genetics

May, 2026

Abstract

The Single Cell Notebooks provide multilingual, open-access training materials for single-cell and spatial transcriptomics analysis through reusable notebooks. They have evolved into a community-driven platform for education and capacity building, lowering language and computational barriers to support equitable participation in omics research.