James Gatter

James Gatter

Former Research Technician

Degrees & Affiliations

BS, Biochemistry & Molecular Biology - UMass Amherst

Background & Interests

Biology Biology
Computational Methods Computational Methods
Hot Stuff Hot Stuff
Outdoor Adventures Outdoor Adventures
Too Many Cooks Too Many Cooks
Top Shelf Top Shelf

Biography

James is a research technician at Shalek Lab working on various computational projects in the lab. In collaboration with the Single Cell Portal team at the Broad Institute, he is working on Alexandria: a single-cell database portal that aspires to facilitate easy analysis for researchers in the field.

James was raised as the son of two artists nearby in Natick. He packed up and moved to Western Mass to attend the University of Massachusetts Amherst, where he declared his major in Biochemistry & Molecular Biology and minor in Computer Science. While interning at MIT, James was introduced to the field of bioinformatics, which presented itself as the perfect intersection of his passions for biochemistry and computer science. He now lives in Somerville, where in his free time he can be found collecting records, cooking spicy food, playing guitar, and every now and then escaping the city for a refreshing walk through nature.

Publications

Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)
Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)
  • Jaiswal et al.,
  • BMC Genomics,
  • 2023
Biology Biology
Cell Atlas Cell Atlas
Computational Methods Computational Methods
Genomics Genomics
Immunology Immunology
Infectious Disease Infectious Disease
R&D R&D
Alex K. Shalek Alex K. Shalek
James Gatter James Gatter
Josh Bromley Josh Bromley
Samira Ibrahim Samira Ibrahim
Sarah Nyquist Sarah Nyquist
Tasneem Jivanjee Tasneem Jivanjee
Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage
Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage
  • Askenase et al.,
  • Science Immunology,
  • 2021
Biology Biology
Genomics Genomics
Immunology Immunology
Medicine Medicine
Alex K. Shalek Alex K. Shalek
Brittany Goods Brittany Goods
James Gatter James Gatter
Riley Drake Riley Drake
Shaina Carroll Shaina Carroll
A Single Human VH-gene Allows for a Broad-Spectrum Antibody Response Targeting Bacterial Lipopolysaccharides in the Blood
A Single Human VH-gene Allows for a Broad-Spectrum Antibody Response Targeting Bacterial Lipopolysaccharides in the Blood
  • Sangesland et al.,
  • Cell Reports,
  • 2020
Biology Biology
Computational Methods Computational Methods
Genomics Genomics
Immunology Immunology
Infectious Disease Infectious Disease
Alex K. Shalek Alex K. Shalek
James Gatter James Gatter
Sam Kazer Sam Kazer
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
  • Ziegler et al.,
  • Cell,
  • 2020
Biology Biology
Cell Atlas Cell Atlas
Genomics Genomics
Immunology Immunology
Infectious Disease Infectious Disease
Statistics Statistics
Ben Mead Ben Mead
Benjamin Doran Benjamin Doran
Carly Ziegler Carly Ziegler
Constantine Tzouanas Constantine Tzouanas
James Gatter James Gatter
Marc Wadsworth II Marc Wadsworth II
Marko Vukovic Marko Vukovic
Sam Allon Sam Allon
Sarah Nyquist Sarah Nyquist
Vincent Miao Vincent Miao
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is enriched in specific cell subsets across tissues
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is enriched in specific cell subsets across tissues
  • Ziegler et al.,
  • SSRN,
  • 2020
Biology Biology
Cell Atlas Cell Atlas
Computational Methods Computational Methods
Genomics Genomics
Immunology Immunology
Infectious Disease Infectious Disease
Medicine Medicine
Benjamin Doran Benjamin Doran
Carly Ziegler Carly Ziegler
Constantine Tzouanas Constantine Tzouanas
James Gatter James Gatter
Marc Wadsworth II Marc Wadsworth II
Marko Vukovic Marko Vukovic
Sam Allon Sam Allon
Sarah Nyquist Sarah Nyquist
Shaina Carroll Shaina Carroll
Vincent Miao Vincent Miao