Degrees & Affiliations
BS, Biochemistry & Molecular Biology - UMass Amherst
Background & Interests
![Biology](https://shaleklab.com/wp-content/uploads/2024/02/cells.png)
![Computational Methods](https://shaleklab.com/wp-content/uploads/2024/02/monitor-with-binary.png)
![Hot Stuff](https://shaleklab.com/wp-content/uploads/2024/02/Hot-Stuff.png)
![Outdoor Adventures](https://shaleklab.com/wp-content/uploads/2024/02/Outdoor-Adventures.png)
![Too Many Cooks](https://shaleklab.com/wp-content/uploads/2024/02/Too-Many-Cooks.png)
![Top Shelf](https://shaleklab.com/wp-content/uploads/2024/02/Top-Shelf.png)
Biography
James is a research technician at Shalek Lab working on various computational projects in the lab. In collaboration with the Single Cell Portal team at the Broad Institute, he is working on Alexandria: a single-cell database portal that aspires to facilitate easy analysis for researchers in the field.
James was raised as the son of two artists nearby in Natick. He packed up and moved to Western Mass to attend the University of Massachusetts Amherst, where he declared his major in Biochemistry & Molecular Biology and minor in Computer Science. While interning at MIT, James was introduced to the field of bioinformatics, which presented itself as the perfect intersection of his passions for biochemistry and computer science. He now lives in Somerville, where in his free time he can be found collecting records, cooking spicy food, playing guitar, and every now and then escaping the city for a refreshing walk through nature.
Publications
![Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)](https://shaleklab.com/wp-content/uploads/2024/03/Screenshot-2023-02-06-at-7.17.43-PM.png)
Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)
![Biology](https://shaleklab.com/wp-content/uploads/2024/02/cells.png)
![Cell Atlas](https://shaleklab.com/wp-content/uploads/2024/02/Cell-Atlas.png)
![Computational Methods](https://shaleklab.com/wp-content/uploads/2024/02/monitor-with-binary.png)
![Genomics](https://shaleklab.com/wp-content/uploads/2024/02/dna.png)
![Immunology](https://shaleklab.com/wp-content/uploads/2024/02/anti-body.png)
![Infectious Disease](https://shaleklab.com/wp-content/uploads/2024/02/Infectious-disease.png)
![R&D](https://shaleklab.com/wp-content/uploads/2024/02/RD.png)
![Alex K. Shalek](https://shaleklab.com/wp-content/uploads/2024/02/Alex-Shalek.png)
![James Gatter](https://shaleklab.com/wp-content/uploads/2024/02/James.png)
![Josh Bromley](https://shaleklab.com/wp-content/uploads/2024/02/Josh.png)
![Samira Ibrahim](https://shaleklab.com/wp-content/uploads/2024/02/Samira.png)
![Sarah Nyquist](https://shaleklab.com/wp-content/uploads/2024/02/Sarah.png)
![Tasneem Jivanjee](https://shaleklab.com/wp-content/uploads/2024/02/Tasneem.png)
![Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage](https://shaleklab.com/wp-content/uploads/2024/03/Screen-Shot-2021-02-22-at-12.16.26-PM.png)
Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage
![Biology](https://shaleklab.com/wp-content/uploads/2024/02/cells.png)
![Genomics](https://shaleklab.com/wp-content/uploads/2024/02/dna.png)
![Immunology](https://shaleklab.com/wp-content/uploads/2024/02/anti-body.png)
![Medicine](https://shaleklab.com/wp-content/uploads/2024/02/Medicine.png)
![Alex K. Shalek](https://shaleklab.com/wp-content/uploads/2024/02/Alex-Shalek.png)
![Brittany Goods](https://shaleklab.com/wp-content/uploads/2024/02/Brittany-Goods.png)
![James Gatter](https://shaleklab.com/wp-content/uploads/2024/02/James.png)
![Riley Drake](https://shaleklab.com/wp-content/uploads/2024/02/Riley-Drake.png)
![Shaina Carroll](https://shaleklab.com/wp-content/uploads/2024/02/Shaina-Carroll.png)
![A Single Human VH-gene Allows for a Broad-Spectrum Antibody Response Targeting Bacterial Lipopolysaccharides in the Blood](https://shaleklab.com/wp-content/uploads/2024/03/Screen-Shot-2020-09-01-at-9.27.59-AM.png)
A Single Human VH-gene Allows for a Broad-Spectrum Antibody Response Targeting Bacterial Lipopolysaccharides in the Blood
![Biology](https://shaleklab.com/wp-content/uploads/2024/02/cells.png)
![Computational Methods](https://shaleklab.com/wp-content/uploads/2024/02/monitor-with-binary.png)
![Genomics](https://shaleklab.com/wp-content/uploads/2024/02/dna.png)
![Immunology](https://shaleklab.com/wp-content/uploads/2024/02/anti-body.png)
![Infectious Disease](https://shaleklab.com/wp-content/uploads/2024/02/Infectious-disease.png)
![Alex K. Shalek](https://shaleklab.com/wp-content/uploads/2024/02/Alex-Shalek.png)
![James Gatter](https://shaleklab.com/wp-content/uploads/2024/02/James.png)
![Sam Kazer](https://shaleklab.com/wp-content/uploads/2024/02/Sam-Kazer.png)
![SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues](https://shaleklab.com/wp-content/uploads/2024/03/Ziegler_CoV_GraphicalAbstract_SciStories_v6-pdf.jpg)
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
![Biology](https://shaleklab.com/wp-content/uploads/2024/02/cells.png)
![Cell Atlas](https://shaleklab.com/wp-content/uploads/2024/02/Cell-Atlas.png)
![Genomics](https://shaleklab.com/wp-content/uploads/2024/02/dna.png)
![Immunology](https://shaleklab.com/wp-content/uploads/2024/02/anti-body.png)
![Infectious Disease](https://shaleklab.com/wp-content/uploads/2024/02/Infectious-disease.png)
![Statistics](https://shaleklab.com/wp-content/uploads/2024/02/two-gaussian-distributions.png)
![Ben Mead](https://shaleklab.com/wp-content/uploads/2024/02/Ben_Mead.png)
![Benjamin Doran](https://shaleklab.com/wp-content/uploads/2024/02/Ben_Doran-1.png)
![Carly Ziegler](https://shaleklab.com/wp-content/uploads/2024/02/Carly-Ziegler.png)
![Constantine Tzouanas](https://shaleklab.com/wp-content/uploads/2024/02/Constantine.png)
![James Gatter](https://shaleklab.com/wp-content/uploads/2024/02/James.png)
![Marc Wadsworth II](https://shaleklab.com/wp-content/uploads/2024/02/Marc-Wadsworth.png)
![Marko Vukovic](https://shaleklab.com/wp-content/uploads/2024/02/Marko.png)
![Sam Allon](https://shaleklab.com/wp-content/uploads/2024/02/Sam_Allon.png)
![Sarah Nyquist](https://shaleklab.com/wp-content/uploads/2024/02/Sarah.png)
![Vincent Miao](https://shaleklab.com/wp-content/uploads/2024/02/Vince.png)
![SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is enriched in specific cell subsets across tissues](https://shaleklab.com/wp-content/uploads/2024/02/covid_logo.png)
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is enriched in specific cell subsets across tissues
![Biology](https://shaleklab.com/wp-content/uploads/2024/02/cells.png)
![Cell Atlas](https://shaleklab.com/wp-content/uploads/2024/02/Cell-Atlas.png)
![Computational Methods](https://shaleklab.com/wp-content/uploads/2024/02/monitor-with-binary.png)
![Genomics](https://shaleklab.com/wp-content/uploads/2024/02/dna.png)
![Immunology](https://shaleklab.com/wp-content/uploads/2024/02/anti-body.png)
![Infectious Disease](https://shaleklab.com/wp-content/uploads/2024/02/Infectious-disease.png)
![Medicine](https://shaleklab.com/wp-content/uploads/2024/02/Medicine.png)
![Benjamin Doran](https://shaleklab.com/wp-content/uploads/2024/02/Ben_Doran-1.png)
![Carly Ziegler](https://shaleklab.com/wp-content/uploads/2024/02/Carly-Ziegler.png)
![Constantine Tzouanas](https://shaleklab.com/wp-content/uploads/2024/02/Constantine.png)
![James Gatter](https://shaleklab.com/wp-content/uploads/2024/02/James.png)
![Marc Wadsworth II](https://shaleklab.com/wp-content/uploads/2024/02/Marc-Wadsworth.png)
![Marko Vukovic](https://shaleklab.com/wp-content/uploads/2024/02/Marko.png)
![Sam Allon](https://shaleklab.com/wp-content/uploads/2024/02/Sam_Allon.png)
![Sarah Nyquist](https://shaleklab.com/wp-content/uploads/2024/02/Sarah.png)
![Shaina Carroll](https://shaleklab.com/wp-content/uploads/2024/02/Shaina-Carroll.png)
![Vincent Miao](https://shaleklab.com/wp-content/uploads/2024/02/Vince.png)